es-MX English (United States)

Dr. José Ruiz Herrera
* INTERACCIÓN PLANTA-MICROBIO
    Y PLANTA-INSECTO
* FISIOLOGÍA,
   BIOQUÍMICA Y METABOLISMO
Dr. José Ruiz Herrera
Puesto: Investigador Emérito.
Telefono: +52 (462) 6239652
Correo electrónico: jruiz@ira.cinvestav.mx
Laboratorio de Desarrollo y Diferenciación de Hongos
 

GRADOS:
QUÍMICO BACTERIÓLOGO Y PARASITÓLOGO. INSTITUTO POLITÉCNICO NACIONAL, MÉXICO, D. F.
DOCTOR OF PHYLOSOPHY. RUTGERS THE STATE UNIVERSITY, NJ, USA

POSCIONES ACADÉMICAS:
PROFESOR Y JEFE DEL DEPARTAMENTO DE MICROBIOLOGÍA. ESCUELA NACIONAL DE CIENCIAS BIOLÓGICAS DEL IPN
PROFESOR Y JEFE DEL DEPARTAMENTO DE GENÉTICA Y BIOLOGÍA MOLECULAR DEL  CINVESTAV DEL IPN
COORDINADOR DEL PROGRAMA DE DESCENTRALIZACIÓN DEL CINVESTAV EN LA UNIVERSIDAD DE GUANAJUATO Y FUNDADOR DEL INSTITUTO DE INVESTIGACIÓN EN BIOLOGÍA EXPERIMENTAL )(IIBE)
PROFESOR DEL DEPARTAMENTO DE INGENIERÍA GENÉTICA, CINVESTAV DEL IPN
PROFESOR E INVESTIGADOR VISITANTE EN: UNIVERSIDADES DE CALIFORNIA, SAN DIEGO Y RIVERSDE, USA, Y
UNIVERISIDADES DE SALAMANCA, VALENCIA, SEVILLA Y EXTREMADURA EN ESPAÑA

PRODUCTIVIDAD CIENTÍFICA
240 PUBLICACIONES ORIGINALES Y REVISIONES  EN REVISTAS Y LIBROS  DE CIRCULACIÓN INTERNACIONAL 4 LIBROS EN INGLÉS , Y DOS EN ESPAÑOL; EDITOR DE 3 LIBROS: 2 EN INGLÉS Y UNO EN  ESPAÑOL

1 PELÍCULA CIENTÍFICA

FORMACIÓN DE RECURSOS HUMANOS:
31 LICENCIATURAS

26 MAESTROS EN CIENCIAS

39 DOCTORES EN CIENCIAS

PRINCIPALES RECONOCIMIENTOS Y PREMIOS ACADÉMICOS
PREMIO DE LA ACADEMIA MEXICANA  DE CIENCIAS

PRESEA “RUTH ALLEN”  DE LA AMERICAN PHYTTHOPATOLOGICAL SOCIETY, USA

PREMIO NACIONAL DE CIENCIAS EXACTAS  NATURALES DEL GOBIERNO DE MÉXICO

PREMIO “MIGUEL HIDALGO Y COSTILLA” DEL CONGRESO DE GUANAJUATO

PREMIO ELSEVIER/ SCOPUS POR LA CITACIÓN MÁS ALTA DEL ESTADO DE GUANAJUATO.   

Publicaciones recientes

 

  • León-Ramírez, C. G., Cabrera-Ponce, J.L., Martínez-Soto, D., Sánchez-Arreguin, A.,  Aréchiga-Carvaja, E. T. & J. Ruiz-Herrera, J. 2017. Transcriptomic analysis of basidiocarp development in Ustilago maydis (DC) Cda. Fungal Genetics and Biology 101: 34-45.
  • Cervantes-Montelongo, J. A., Aréchiga-Carvajal, E. T.@ Ruiz-Herrera, J. 2016. Adaptation of Ustilago maydis to extreme pH values: A transcriptomic analysis. Journal of Basic Microbiology  66: 1-12.
  • Salgado-Lugo, H.,  Sánchez-Arreguín, A. @ Ruiz-Herrera, J. 2016. Heterologous expression of an active chitin synthase from Rhizopus oryzae. Fungal Genetics and Biology 97: 10-17.
  • Martínez-Soto, D. & Ruiz-Herrera, J. 2016. Infection of Zea mays by haploid stains of Ustilago maydis. Fungal Genomics and Biology 6: DOI: 10.4172/2165-8056.1000141.266.
  • Martínez-Soto, D., Pérez-García, F. E.  & Ruiz-Herrera, J. 2016. Arabidopsis infection by haploid or diploid strains of Ustilago maydis reveal its capacity as a necrothophic or biotrophic phytopathogen. Fungal Genomics and Biology 6: Doi:10.4172/2165-8056.1000133.
  • Martínez-Soto, D. & Ruiz-Herrera, J. 2016. Induced resitance to Ustilago maydis in Zea mays inoculated in non-sterile conditions. International journal of Biotechnology for Wellness Industries. 5 51-59.
  • Cervantes- Chávez, J. A: , Valdés-Santiago, L., Bakkeren, G., Hurtado-Santiago, E., Ramírez-León, C. G:, Esquivel-Naranjo, U., Linderos-Jaime, F., Rodríguez-Aza, Y & Ruiz-Herrera, J. 2016. Trehalose is required for stress resistance and virulence of the Basidiomycota plant pathogen Ustilago maydis. Microbiology 162: 1009-1022.
  • Corrochano, L. M. et al. 2016. Expansion of signal transduction pathways in fungi by extensive genpme duplication. Current Biology 26: 1577-1584.
  • Ortiz-Castellanos, L.  &  Ruiz-Herrera, J. 2015. Phylogenteic relationships of wall-synthesizing enzymes of Basidiomycota confirm the phylogeny of their subphyla. Folia Microbiologica 60: 143-150
  • Valdés-Santiago, L. & Ruiz-Herrera, J. 2015. Polyamines in Fungi. Their distribution, Metabolism, and Role in Cell Differentiation and Morphogenesis. CRC Press, Boca Raton, London, New York, 186 pp. ISBN 978-1-4897-1742-7.
  • Martínez-Soto, D., González-Prieto, J. M. & Ruiz-Herrera, J. 2015. Transcriptomic analysis of the GCN5 gene reveals mechanisms of the epigenetic regulation of virulence and morphogenesis in Ustilago maydis. FEMS Yeast Research 15: doi:10.1093/femsyr/fov055.
  • Ruiz-Herrera, J., León-Ramírez, C., Vera-Nuñez, A., Sánchez-Arreguín, A., Ruiz-Medrano, R., Salgado-Lugo, H., Segura-Sánchez, L. & Peña-Cabriales, J. J. 2015. A novel intracelular nitrogen-fixing simbiosis made by Ustilago maydis and Bacillus sp. New Phytologist DOI:10.1111/nph.13359.
  • Martínez-Soto, D. & Ruiz-Herrera, J. 2015. Regulation of the expression of the whole genome of Ustilago maydis by a MAPK pathway. Archives of Microbiology 197: 575-588.
  • Valdés-Santiago, L. & Ruiz-Herrera, J. 2015. Polyamines in Fungi. Their distribution, Metabolism, and Role in Cell Differentiation and Morphogenesis. CRC Press, Boca Raton, London, New York, 186 pp. ISBN 978-1-4897-1742-7.
  • Martínez-Soto, D., González-Prieto, J. M. & Ruiz-Herrera, J. 2015. Transcriptomic analysis of the GCN5 gene reveals mechanisms of the epigenetic regulation of virulence and morphogenesis in Ustilago maydis. FEMS Yeast Research 15: doi:10.1093/femsyr/fov055.
  • Ruiz-Herrera, J., León-Ramírez, C., Vera-Nuñez, A., Sánchez-Arreguín, A., Ruiz-Medrano, R., Salgado-Lugo, H., Segura-Sánchez, L. & Peña-Cabriales, J. J. 2015. A novel intracelular nitrogen-fixing simbiosis made by Ustilago maydis and Bacillus sp. New Phytologist DOI:10.1111/nph.13359.
  • Martínez-Soto, D. & Ruiz-Herrera, J. 2015. Regulation of the expression of the whole genome of Ustilago maydis by a MAPK pathway. Archives of Microbiology 197: 575-588.
  • Soberanes-Gutiérrez, C., Juárez-Montiel, M., Olguín-Rodríguez, O., Hernández-Rodríguez, C., Ruiz-Herrera, J. & Villa-Tanaca, L. 2015. The pep4 gene encoding proteinase A is involved in dimorphism and pathogenesis of Ustilago maydis. Molecular Plant Pathology 16: 837-846.synthesizing enzymes of Basidiomycota confirm the phylogeny of their subphyla. Folia Microbiologica 60: 143-150.
  • Cinthia V. Soberanes-Gutiérrez, Margarita Juárez-Montiel, Omar Olguín-Rodríguez, César Hernández-Rodríguez, José Ruiz-Herrera and Lourdes Villa-Tanaca. The pep4 gene encoding proteinase A is involved in dimorphism and pathogenesis of Ustilago maydis. Molecular Plant Pathology. 2015, Vol. 16(8): 837-846. DOI: 10.1111/mpp.12240.
  • Domingo Martínez-Soto and José Ruiz-Herrera. Regulation of the expression of the whole genome of Ustilago maydis by a MAPK pathway. Arch Microbiol. 2015, Vol. 197: 575-588. DOI: 10.1007/s00203-015-1087-2.
  • Domingo Martínez-Soto, Juan Manuel González-Prieto and José Ruiz-Herrera. Transcriptomic analysis of the GCN5 gene reveals mechanisms of the epigenetic regulation of virulence and morphogenesis in Ustilago maydis. FEMS Yeast Research. 2015, Vol. 15: 1-14. DOI: 10.1093/femsyr/fov055.
  • José Ruiz-Herrera, Claudia León-Ramírez, Antonio Vera-Núñez, Alejandro Sánchez-Arreguín, Roberto Ruiz-Medrano, Holjes Salgado-Lugo, Lino Sánchez-Segura and Juan José Peña-Cabriales. A novel intracellular nitrogen-fixing symbiosis made by Ustilago maydis and Bacillus spp. New Phytologist. 2015, Vol. 207: 769-777. DOI:10.1111/nph.13359.
  • Lucila Ortiz-Castellanos and José Ruiz-Herrera. Phylogenetic relationships of the wall-synthesizing enzymes of Basidiomycota confirm the phylogeny of their subphyla. Folia Microbiol. 2015, Vol. 60: 143-150. DOI: 10.1007/s12223-014-0354-y.
  • Antonio Caminero, Enrique Calvo, Eulogio Valentín, José Ruiz-Herrera, Juan A. López and Rafael  Sentandreu. Identification of Candida albicans wall manoproteins covalently linked by disulphide and/or alkali-sensitive bridges. Yeast. 2014, Vol. 31: 137-144. DOI:10.1002/yea.3003.
  • A.S. Palande, S.V. Kulkarni, C. León-Ramírez, E. Campos-Góngora, J. Ruiz-Herrera and M.V.  Deshpande. Dimorphism and hydrocarbon metabolism in Yarrowia lipolytica var. indica. Archives of Microbiology. 2014, Vol. 196: 137-144. DOI: 10.1007/s00203-014-0990-2.
  • Claudia G. León-Ramírez, José Alejandro Sánchez-Arreguín and José Ruiz-Herrera. Ustilago maydis, a delicacy of the aztec cuisine and a model for research. Natural Resources. 2014, Vol. 5: 256-267.  DOI:10.4236/nr.2014.56024.
  • Eduardo Franco-Frías, José Ruiz-Herrera and Elva T. Aréchiga-Carvajal. Transcriptomic analysis of the role of Rim101/PacC in the adaptation of Ustilago maydis to an alkaline environment. Microbiology. 2014, Vol. 160: 1985-1998. DOI: 10.1099/mic.0.076216-0.
  • Juan Manuel González-Prieto, Raymundo Rosas-Quijano, Angel Domínguez and José Ruiz- Herrera. The UmGcn5 gene encoding histone acetyltranferase from Ustilago maydis is involved in dimorphism and virulence. Fungal Genetics and Biology. 2014, Vol.71: 86-95. DOI:10.1016/j.fgb.2014.09.002.
  • Laura Valdés-Santiago and José Ruiz-Herrera. Stress and polyamine metabolism in fungi. Frontiers in Chemistry. 2014, Vol. 1: 1-10. DOI:10.3389/fchem.2013.00042.
  • Lucila Ortiz-Castellanos and José Ruiz Herrera. Phylogenetic relationships of the wall-synthesizing enzymes of Basidiomycota confirm the phylogeny of their subphyla. Folia Microbiol. 2014, 1-8. DOI:10.1007/s12223-014-0354-y.
  • Eduardo Franco-Frías, José Ruiz-Herrera and Elva T. Aréchiga-Carvajal. Transcriptomic analysis of the role of Rim101/PacC in the adaptation of Ustilago maydis to an alkaline environment. Microbiology. 2014, Vol. 160: 1985-1998. DOI: 10.1099/mic.0.076216-0.
  • Domingo Martínez-Soto, Angélica M. Robledo-Briones, Andrés A. Estrada-Luna and José Ruiz-Herrera. Transcriptomic analysis of Ustilago maydis infecting Arabidopsis reveals important aspects of the fungus pathogenc mechanisms. Plant Signal Behavior. 2013, 8(8): e25059. DOI: 10.4161/psb.25059.
  • Domingo Martínez-Soto and José Ruiz-Herrera, J. Transcriptomic analysis of the dimorphic transition of Ustilago maydis induced in vitro by a change in pH. Fungal Genetics and Biology. 2013, 58-59:116-125. DOI: 10.1016/j.fgb.2013.08.011.
  • Eduardo Campos-Góngora, Encarnación Andaluz, Alberto Bellido, José Ruiz-Herrera and German Larriba. RAD52 ortholog of Yarrowia lipolytica is essential for nuclear integrity and DNA repair. FEMS Yeast Research. 2013, 13:441-452. DOI: 10/1111/1567-1364.12047.
  • José L. Martínez-Salgado, Claudia G. León Ramírez, Alberto Barrera Pacheco, José Ruiz Herrera, Ana P. Barba de la Rosa. Analysis of the regulation of the Ustilago maydis proteome by dimorphism, pH or MAPK and GCN5 genes. Journal of Proteomics. 2013, 79:251-262. DOI: 10.1016/j.prot.2012.12.022.
  • Mariana Robledo-Briones and José Ruiz Herrera. Regulation of genes involved in cell wall synthesis and structure durin Ustilago maydis dimorphism. Fems Yeast Res. 2013, 13: 74-84. DOI: 10.1111/1567-1364.12011.
  • León-Ramírez, C.G., Sánchez-Arreguín, J.A., Cabrera-Ponce, J.L. and Ruiz-Herrera, J. Biotechnology: Beyond Borders. “Role of white collar proteins in the Basidiomycota fungus Ustilago maydis”. Eds.: Deshpannde, M. V. and Ruiz-Herrera, J. Ed.: CSIR-National Chemical laboratory. Pune, India. 2013, 39-49pp. ISBN: En trámite
  • Ruiz-Herrera, J., Robledo-Briones, M. and Martínez-Soto, D. Biotechnology: Beyond Borders. “Experimental pathosystems as a tool for the identification of virulence factors in pathogenic fungi”. Eds.: Deshpannde, M. V. and Ruiz-Herrera, J. Ed.: CSIR-National Chemical laboratory. Pune, India. 2013. 30-38pp. ISBN: en trámite.
  • Adán Topiltín Morales-Vargas, Ángel Domíngaez and José Ruiz-Herrera. Identification of dimorphism-involved genes of Yarrowia lipolytica by'means of microarray analysis. Research in Microbiologt. 2012. 163:378-387.
  • José L. Cabrera-Ponce, Claudia G. León-Ramirez, Aurora Verver-Vargas, Lourdes Palma-Tirado and José Ruiz-Herrera. Metamorphosis of the Basidiomycota Ustilago maydis: Transformation of yeast-like cells into basidiocarps. Fungal Genetics and Biologt. 2012,49:765-771.
  • Laura Valdés-Santiago, José Antonio Cervantes-Chávez, Rober Winkler, Claudia G. León-Ramírez and José Ruiz-Herrera. Phenotypic comparison of samdc and spe mutants reveals complex ref ationships of polyamine metabolism in Ustilago maydis. Microbiolog,,.2012, 158:674-6842.
  • Mariana Robledo-Briones and José Ruiz-Herrera. Transcriptional regulation of the genes encoding chitin and B-1,3-glucan slmthases from Ustilago maydis. Current Microbiology. 2012,65:85-90.
  • José Ruiz-Herrera and Claudia G. León-Ramírez. Dimorphic Fungi: Their Importance a Models for Differentiation and Pathogenesis. Development and dimorphism of the pathogenic Basidiomycota Llstilago maydis. Editores: J. Ruiz-Herrera. Editorial; Bentham E. Books. London, UK. 2012,105-116pp.ISBN: elSBN-1-60805-364-3.
  • Adán Topiltín Morales-Vargas, Angel Domínguez and José Ruiz-Herrera. ldentification of dimorphism-involved genes of Yarrowia lipolytica by means of microarray arulytit. Rnr*rrh in Microbiology. 2012, 163:378-387.
  • Citlali Fonseca-García, Claudia G. León-Ramírez & José Ruiz-Herrera, The regulation of different metabolic pathways through the Pal/Rim pathway in Ustilago maydis, FEMS Yeast Research, 2012
  • Laura Valdés-Santiago, José Antonio Cervantes-Chávez, Robert Winkler,Claudia G. León-Ramírez and José Ruiz-Herrera, Phenotypic comparison of samdc and spe mutants reveals complex relationships of polyamine metabolism in Ustilago maydis, Microbiology, 2012
  • Florencia Kronberg, Romina Giacometti, José Ruiz-Herrera, and Susana Passeron. Characterization of the regulatory subunit of Yarrowia lipolytica cAMP-dependent protein kinase. Evidences of a monomeric protein. Archives of Bichemistry and Biophysics. (2011) 509: 66-75. 10.1016/j.abb.2011.03.001.
  • Citlali Fonseca-García, Mercedes G. López, Elva T.  Aréchiga-Carvajal and José Ruiz-Herrera. A novel polysaccharide secreted by pal/rim mutants of the phytopathogen fungus Ustilago maydis. Carbohydrate Polymers. (2011) 86:1646-1650. doi:10.1016/j.carbpol.2011.06.077.
  • Andrés Adolfo Estrada Luna, Alicia Chagolla López, Hilda Eréndida Ramos Aboites, Angelina Guerrero Ambriz  y José Ruiz Herrera.  Identificación de las proteínas secretadas por el hongo Ustilago maydis (de Candole) Corda (bacidiomiceto) cultivado en condiciones in vitro. Electrónica Nova Scientia. (2010) 4: 104-130.
  • Laura Valdés Santiago, Doralinda Guzmán de Peña and  José Ruiz Herrera. Life without putrescine: disruption of the gene-encoding polyamine oxidase in Ustilago maydis odc mutants. FEMS Yeast Research. (2010) 10: 928-940.
  • José Ruiz Herrera and  Lucila Ortiz Castellanos. Analysis of the phylogenetic relationships and evolution of the cell walls from yeasts and fungi. FEMS Yeast Research. (2010) 10: 225-243.
  • Claudia G. León Ramírez, Laura Valdés Santiago, Eduardo Campos Góngora, Lucila Ortiz Castellanos, Elva T. Aréchiga Carvajal and José Ruiz Herrera. A molecular probe for Basidiomycota: the spermidine synthase-saccharopine dehydrogenase chimeric gene. FEMS Microbiology Letters. (2010) 312: 77-83.
  • Cervantes Chávez José Antonio, Ortiz Castellanos Lucila, Tejeda Sartorius Miriam, Gold Scott and Ruiz-Herrera José. Functional analysis of the pH responsive pathway Pal/Rim in the phytopathogenic basidiomycete Ustilago maydis. Fungal Genetics and Biology. (2010) 47: 446-457.
  • José Ruiz-Herrera, Cristina G. Reynaga-Peña and Elva T. Aréchiga-Carvajal. Agriculturally Important Microorganisms. "Ustilago maydis as a model for phytopathogenic fungal development". Khachatourians G. G., Arora D.K., Rajendran T.P. and Srivastava K. (Eds.). Academic World International. (2009) 1: 107-122. ISBN: 9788190310413
  • Alemán-Duarte, M.V., Méndez-Morán, L. and Ruiz-Herrera, J. "Obtención de un banco substractivo (72 h) para el análisis de genes diferencialmente expresados en el patosistema experimental Ustilago maydis-Arabidopsisi thaliana". En: Carvajal, S and Pimienta Barrios, E., Eds. Avances en la Investigación Científica del CUCBA. Consejo Estatal de Ciencia y Tecnología de Jalisco, (2008) 93-97 pp.
  • Ruiz-Herrera, J. "Ustilago maydis: ascenso de un hongo mexicano de la gastronomía local al mundo científico". (artículo por invitación). Revista electrónica Nova Scientia. (2008) 1: 118-135 pp.
  • Ruiz-Herrera, J., Ortiz-Castellanos, L., Martínez, A. I., León-Ramírez, C. and Sentandreu, R. "Analysis of the proteins involved in the structure and synthesis of the cell wall of Ustilago maydis". Fungal Genetics and Biology. (2008) 45: 571-576 pp.
  • Rosas-Quijano, R. and Ruiz-Herrera, J. "Functional analysis of the MATB mating-type idiomorph of the dimorphic fungus Yarrowia lipolytica". Current Microbiology. (2008) 57: 115-120 pp.
  • Rodríguez-Kessler, M., A. Ruiz, O. A., Maiale, S., Ruiz-Herrera, J. and Jiménez-Bremont, J.F. "Polyamine metabolism in maize tumors induced by Ustilago maydis". Plant Physiology and Biochemistry. (2008) 46: 805-814 pp.
  • Jiménez-Bremont, J. F. and Ruiz-Herrera, J. "Analysis of the transcriptional regulation of YlODC gene from the dimorphic fungus Yarrowia lipolytica". Microbiological Research. (2008) 163: 717-723 pp.
  • Castillo, L., Martínez, A. I., Gelis, S., Ruiz-Herrera, J., Valentín, E. and Sentandreu, R. "Genomic response programs of Saccharomyces cerevisiae following protoplasting and regeneration". Fungal Genetics and Biology. (2008) 45: 253-265 pp.
  • Castillo, L., Calvo, E., Martínez, A.I., Ruiz-Herrera, J., Valentín, E.,  Lopez, J. A. and Sentandreu, R. "A study of the Candida albicans cell wall proteome". Proteomics (2008) 8: 3871-3881 pp.
  • Ruiz-Herrera, J. (2008) Viaje al Asombroso Mundo de los Hongos. Fondo de Cultura Económica. México, D. F. Book, accepted for publication.